Almost all infectious and deadly viruses are caused due to their RNA coding. Researchers from established research universities, such as NYU and Columbia, alongside the New York Genome Center, have researched and discovered a new type of CRISPR technology that targets this RNA and might just prevent the spread of deadly diseases and infections.
A new study from Nature Biotechnology has shown that the development of major gene editing tools like CRISPR will serve to be beneficial at an even larger scale. CRISPR, in a nutshell, is a gene editing piece of technology that can be used to switch gene expression on and off. Up until now, it was only known that CRISPR, with the help of the enzyme Cas9, could only edit DNA. With the recent discovery of Cas13, RNA editing might just become possible as well.
RNA is a second type of genetic material present within our cells and body, which plays an essential role in various biological roles such as regulation, expression, coding, and even decoding genes. It plays a significant role in biological processes such as protein synthesis, and these proteins are necessary to carry out various processes.
RNA viruses
RNA viruses usually exist in 2 types – single-stranded RNA (ssRNA), and double-stranded RNA (dsRNA). RNA viruses are notoriously famous for causing the most common and the most well-known infections – examples being the common cold, influenza, Dengue, hepatitis, Ebola, and even COVID-19. These dangerous and possibly life-threatening viruses only have RNA as their genetic material. So, how can/might AI and CRISPR technology, using the enzyme Cas13 help fight against these nuisances?
Role of CRISPR-Cas13
RNA targeting CRISPRs have various applications – from editing and blocking genes to finding out possible drugs to cure said pathogenic disease/infection. As a report from NYU states, “Researchers at NYU and the New York Genome Center created a platform for RNA-targeting CRISPR screens using Cas13 to better understand RNA regulation and to identify the function of non-coding RNAs. Because RNA is the main genetic material in viruses including SARS-CoV-2 and flu,” the applications of CRISPR-Cas13 can promise us cures and newer ways to treat severe viral infections.
“Similar to DNA-targeting CRISPRs such as Cas9, we anticipate that RNA-targeting CRISPRs such as Cas13 will have an outsized impact in molecular biology and biomedical applications in the coming years,” said Neville Sanjana, associate professor of biology at NYU, associate professor of neuroscience and physiology at NYU Grossman School of Medicine. Learn more about CRISPR, Cas9, and Cas13 here.
Role of AI
Artificial intelligence is becoming more and more reliant as days pass by. So much so, that it can be used to precisely target RNA coding, especially in the given case scenario. TIGER (Targeted Inhibition of Gene Expression via guide RNA design), was trained on the data from the CRISPR screens. Comparing the predictions generated by the model and laboratory tests in human cells, TIGER was able to predict both on-target and off-target activity, outperforming previous models developed for Cas13
With the assistance of AI with an RNA-targeting CRISPR screen, TIGER’s predictions might just initiate new and more developed methods of RNA-targeting therapies. In a nutshell, AI will be able to “sieve” out undesired off-target CRISPR activity, making it a more precise and reliable method.
- Wessels, HH., Stirn, A., Méndez-Mancilla, A. et al. Prediction of on-target and off-target activity of CRISPR–Cas13d guide RNAs using deep learning. Nat Biotechnol (2023). https://doi.org/10.1038/s41587-023-01830-8
- Bayoumi, Mahmoud, and Muhammad Munir. “Potential Use of CRISPR/CAS13 Machinery in Understanding Virus–Host Interaction.” Frontiers, 25 Oct. 2021, www.frontiersin.org/articles/10.3389/fmicb.2021.743580/full.
- X, Science. “AI Combined with CRISPR Precisely Controls Gene Expression.” Phys.Org, 3 July 2023, phys.org/news/2023-06-ai-combined-crispr-precisely-gene.html.
- Ktori, Sophia. “CRISPR-Cas13 Developed as a Combination Antiviral and Diagnostic System.” GEN, 2 June 2023, www.genengnews.com/news/crispr-cas13-developed-as-combination-antiviral-and-diagnostic-system/.
